A pandoc LaTeX template for creating a PhD thesis in markdown and LaTeX.
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% Options for packages loaded elsewhere
\PassOptionsToPackage{unicode$for(hyperrefoptions)$,$hyperrefoptions$$endfor$}{hyperref}
\PassOptionsToPackage{hyphens}{url}
$if(colorlinks)$
\PassOptionsToPackage{dvipsnames,svgnames*,x11names*}{xcolor}
$endif$
$if(dir)$
$if(latex-dir-rtl)$
\PassOptionsToPackage{RTLdocument}{bidi}
$endif$
$endif$
$if(CJKmainfont)$
\PassOptionsToPackage{space}{xeCJK}
$endif$
%
\documentclass[
$if(fontsize)$
$fontsize$,
$endif$
$if(lang)$
$babel-lang$,
$endif$
$if(papersize)$
$papersize$paper,
$endif$
$if(twoside)$
twoside,
$endif$
$if(openright)$
openright,
$endif$
$if(title)$
titlepage,
$endif$
numbers=noenddot,
headinclude,
footinclude,
cleardoublepage=empty,
abstract=on,
BCOR=5mm,
dvipsnames,
$for(classoption)$
$classoption$$sep$,
$endfor$
]{scrreport}
$if(fontfamily)$
\usepackage[$for(fontfamilyoptions)$$fontfamilyoptions$$sep$,$endfor$]{$fontfamily$}
$else$
\usepackage{lmodern}
$endif$
$if(linestretch)$
\usepackage{setspace}
$endif$
\usepackage{amssymb,amsmath}
\usepackage{ifxetex,ifluatex}
\ifnum 0\ifxetex 1\fi\ifluatex 1\fi=0 % if pdftex
\usepackage[$if(fontenc)$$fontenc$$else$T1$endif$]{fontenc}
\usepackage[utf8]{inputenc}
\usepackage{textcomp} % provide euro and other symbols
\else % if luatex or xetex
$if(mathspec)$
\ifxetex
\usepackage{mathspec}
\else
\usepackage{unicode-math}
\fi
$else$
\usepackage{unicode-math}
$endif$
\defaultfontfeatures{Scale=MatchLowercase}
\defaultfontfeatures[\rmfamily]{Ligatures=TeX,Scale=1}
$if(mainfont)$
\setmainfont[$for(mainfontoptions)$$mainfontoptions$$sep$,$endfor$]{$mainfont$}
$endif$
$if(sansfont)$
\setsansfont[$for(sansfontoptions)$$sansfontoptions$$sep$,$endfor$]{$sansfont$}
$endif$
$if(monofont)$
\setmonofont[$for(monofontoptions)$$monofontoptions$$sep$,$endfor$]{$monofont$}
$endif$
$for(fontfamilies)$
\newfontfamily{$fontfamilies.name$}[$for(fontfamilies.options)$$fontfamilies.options$$sep$,$endfor$]{$fontfamilies.font$}
$endfor$
$if(mathfont)$
$if(mathspec)$
\ifxetex
\setmathfont(Digits,Latin,Greek)[$for(mathfontoptions)$$mathfontoptions$$sep$,$endfor$]{$mathfont$}
\else
\setmathfont[$for(mathfontoptions)$$mathfontoptions$$sep$,$endfor$]{$mathfont$}
\fi
$else$
\setmathfont[$for(mathfontoptions)$$mathfontoptions$$sep$,$endfor$]{$mathfont$}
$endif$
$endif$
$if(CJKmainfont)$
\ifxetex
\usepackage{xeCJK}
\setCJKmainfont[$for(CJKoptions)$$CJKoptions$$sep$,$endfor$]{$CJKmainfont$}
\fi
$endif$
$if(luatexjapresetoptions)$
\ifluatex
\usepackage[$for(luatexjapresetoptions)$$luatexjapresetoptions$$sep$,$endfor$]{luatexja-preset}
\fi
$endif$
$if(CJKmainfont)$
\ifluatex
\usepackage[$for(luatexjafontspecoptions)$$luatexjafontspecoptions$$sep$,$endfor$]{luatexja-fontspec}
\setmainjfont[$for(CJKoptions)$$CJKoptions$$sep$,$endfor$]{$CJKmainfont$}
\fi
$endif$
\fi
% Use upquote if available, for straight quotes in verbatim environments
\IfFileExists{upquote.sty}{\usepackage{upquote}}{}
\IfFileExists{microtype.sty}{% use microtype if available
\usepackage[$for(microtypeoptions)$$microtypeoptions$$sep$,$endfor$]{microtype}
\UseMicrotypeSet[protrusion]{basicmath} % disable protrusion for tt fonts
}{}
$if(indent)$
$else$
\makeatletter
\@ifundefined{KOMAClassName}{% if non-KOMA class
\IfFileExists{parskip.sty}{%
\usepackage{parskip}
}{% else
\setlength{\parindent}{0pt}
\setlength{\parskip}{6pt plus 2pt minus 1pt}}
}{% if KOMA class
\KOMAoptions{parskip=half}}
\makeatother
$endif$
$if(verbatim-in-note)$
\usepackage{fancyvrb}
$endif$
\usepackage{xcolor}
\IfFileExists{xurl.sty}{\usepackage{xurl}}{} % add URL line breaks if available
\IfFileExists{bookmark.sty}{\usepackage{bookmark}}{\usepackage{hyperref}}
\urlstyle{same} % disable monospaced font for URLs
$if(verbatim-in-note)$
\VerbatimFootnotes % allow verbatim text in footnotes
$endif$
$if(geometry)$
\usepackage[$for(geometry)$$geometry$$sep$,$endfor$]{geometry}
$endif$
$if(listings)$
\usepackage{listings}
\newcommand{\passthrough}[1]{#1}
\lstset{defaultdialect=[5.3]Lua}
\lstset{defaultdialect=[x86masm]Assembler}
$endif$
$if(lhs)$
\lstnewenvironment{code}{\lstset{language=Haskell,basicstyle=\small\ttfamily}}{}
$endif$
$if(highlighting-macros)$
$highlighting-macros$
$endif$
$if(tables)$
\usepackage{longtable,booktabs}
% Correct order of tables after \paragraph or \subparagraph
\usepackage{etoolbox}
\makeatletter
\patchcmd\longtable{\par}{\if@noskipsec\mbox{}\fi\par}{}{}
\makeatother
% Allow footnotes in longtable head/foot
\IfFileExists{footnotehyper.sty}{\usepackage{footnotehyper}}{\usepackage{footnote}}
\makesavenoteenv{longtable}
$endif$
$if(graphics)$
\usepackage{graphicx}
\makeatletter
\def\maxwidth{\ifdim\Gin@nat@width>\linewidth\linewidth\else\Gin@nat@width\fi}
\def\maxheight{\ifdim\Gin@nat@height>\textheight\textheight\else\Gin@nat@height\fi}
\makeatother
% Scale images if necessary, so that they will not overflow the page
% margins by default, and it is still possible to overwrite the defaults
% using explicit options in \includegraphics[width, height, ...]{}
\setkeys{Gin}{width=\maxwidth,height=\maxheight,keepaspectratio}
% Set default figure placement to htbp
\makeatletter
\def\fps@figure{htbp}
\makeatother
$endif$
$if(links-as-notes)$
% Make links footnotes instead of hotlinks:
\DeclareRobustCommand{\href}[2]{#2\footnote{\url{#1}}}
$endif$
$if(strikeout)$
\usepackage[normalem]{ulem}
% Avoid problems with \sout in headers with hyperref
\pdfstringdefDisableCommands{\renewcommand{\sout}{}}
$endif$
\setlength{\emergencystretch}{3em} % prevent overfull lines
\providecommand{\tightlist}{%
\setlength{\itemsep}{0pt}\setlength{\parskip}{0pt}}
$if(numbersections)$
\setcounter{secnumdepth}{$if(secnumdepth)$$secnumdepth$$else$5$endif$}
$else$
\setcounter{secnumdepth}{-\maxdimen} % remove section numbering
$endif$
$if(block-headings)$
% Make \paragraph and \subparagraph free-standing
\ifx\paragraph\undefined\else
\let\oldparagraph\paragraph
\renewcommand{\paragraph}[1]{\oldparagraph{#1}\mbox{}}
\fi
\ifx\subparagraph\undefined\else
\let\oldsubparagraph\subparagraph
\renewcommand{\subparagraph}[1]{\oldsubparagraph{#1}\mbox{}}
\fi
$endif$
$if(pagestyle)$
\pagestyle{$pagestyle$}
$endif$
$for(header-includes)$
$header-includes$
$endfor$
$if(lang)$
\ifxetex
% Load polyglossia as late as possible: uses bidi with RTL langages (e.g. Hebrew, Arabic)
\usepackage{polyglossia}
\setmainlanguage[$for(polyglossia-lang.options)$$polyglossia-lang.options$$sep$,$endfor$]{$polyglossia-lang.name$}
$for(polyglossia-otherlangs)$
\setotherlanguage[$for(polyglossia-otherlangs.options)$$polyglossia-otherlangs.options$$sep$,$endfor$]{$polyglossia-otherlangs.name$}
$endfor$
\else
\usepackage[shorthands=off,$for(babel-otherlangs)$$babel-otherlangs$,$endfor$main=$babel-lang$]{babel}
$if(babel-newcommands)$
$babel-newcommands$
$endif$
\fi
$endif$
\ifluatex
\usepackage{selnolig} % disable illegal ligatures
\fi
$if(dir)$
\ifxetex
% Load bidi as late as possible as it modifies e.g. graphicx
\usepackage{bidi}
\fi
\ifnum 0\ifxetex 1\fi\ifluatex 1\fi=0 % if pdftex
\TeXXeTstate=1
\newcommand{\RL}[1]{\beginR #1\endR}
\newcommand{\LR}[1]{\beginL #1\endL}
\newenvironment{RTL}{\beginR}{\endR}
\newenvironment{LTR}{\beginL}{\endL}
\fi
$endif$
$if(natbib)$
\usepackage[$natbiboptions$]{natbib}
\bibliographystyle{$if(biblio-style)$$biblio-style$$else$plainnat$endif$}
$endif$
$if(biblatex)$
\usepackage[$if(biblio-style)$style=$biblio-style$,$endif$$for(biblatexoptions)$$biblatexoptions$$sep$,$endfor$]{biblatex}
$for(bibliography)$
\addbibresource{$bibliography$}
$endfor$
$endif$
$if(nocite-ids)$
\nocite{$for(nocite-ids)$$it$$sep$, $endfor$}
$endif$
$if(csl-refs)$
\newlength{\cslhangindent}
\setlength{\cslhangindent}{1.5em}
\newlength{\csllabelwidth}
\setlength{\csllabelwidth}{3em}
\newenvironment{CSLReferences}[2] % #1 hanging-ident, #2 entry spacing
{% don't indent paragraphs
\setlength{\parindent}{0pt}
% turn on hanging indent if param 1 is 1
\ifodd #1 \everypar{\setlength{\hangindent}{\cslhangindent}}\ignorespaces\fi
% set entry spacing
\ifnum #2 > 0
\setlength{\parskip}{#2\baselineskip}
\fi
}%
{}
\usepackage{calc}
\newcommand{\CSLBlock}[1]{#1\hfill\break}
\newcommand{\CSLLeftMargin}[1]{\parbox[t]{\csllabelwidth}{#1}}
\newcommand{\CSLRightInline}[1]{\parbox[t]{\linewidth - \csllabelwidth}{#1}\break}
\newcommand{\CSLIndent}[1]{\hspace{\cslhangindent}#1}
$endif$
$if(csquotes)$
\usepackage{csquotes}
$endif$
\PassOptionsToPackage{
$if(draf)$
drafting=true,
$endif$
$if(toc-aligned)$
tocaligned=$toc-aligned$,
$endif$
$if(toc-dotted)$
dottedtoc=$toc-dotted$,
$endif$
$if(eulerchapternumber)$
eulerchapternumbers=$eulerchapternumber$,
$endif$
$if(lineheaders)$
linedheaders=$lineheaders$,
$endif$
$if(floatnumbering)$
floatperchapter=$floatnumbering$,
$endif$ % numbering per chapter for all floats (i.e., Figure 1.1)
eulermath=false, % use awesome Euler fonts for mathematical formulae (only with pdfLaTeX)
beramono=true, % toggle a nice monospaced font (w/ bold)
palatino=true, % deactivate standard font for loading another one, see the last section at the end of this file for suggestions
$if(style)$
style=$style$ % classicthesis, arsclassica
$endif$
}{classicthesis}
\usepackage{classicthesis}
\usepackage{graphicx}
$if(acronym)$
\PassOptionsToPackage{
$if(ac-onlyused)$
printonlyused,
$endif$
$if(ac-smaller)$
smaller,
$endif$
$if(ac-footnote)$
footnote,
$endif$
$if(ac-nohyperlinks)$
nohyperlinks,
$endif$
$if(ac-withpage)$
withpage,
$endif$
}{acronym}
\usepackage{acronym}
$endif$
\hypersetup{
$if(title-meta)$
pdftitle={$title-meta$},
$endif$
$if(author-meta)$
pdfauthor={$author-meta$},
$endif$
$if(lang)$
pdflang={$lang$},
$endif$
$if(subject)$
pdfsubject={$subject$},
$endif$
$if(keywords)$
pdfkeywords={$for(keywords)$$keywords$$sep$, $endfor$},
$endif$
$if(colorlinks)$
colorlinks=true,
linkcolor=$if(linkcolor)$$linkcolor$$else$CTlink$endif$,
filecolor=$if(filecolor)$$filecolor$$else$Black$endif$,
citecolor=$if(citecolor)$$citecolor$$else$CTcitation$endif$,
urlcolor=$if(urlcolor)$$urlcolor$$else$CTurl$endif$,
$else$
hidelinks,
colorlinks=false,
$endif$
pdfcreator={LaTeX via pandoc, ClassicThesis and LaTeKiSS}
}
\begin{document}
\pagenumbering{roman}
% Titlepage
$if(title)$
\begin{titlepage}
$if(twoside)$
\begin{addmargin}[-1cm]{-3.4cm}
$else$
\begin{addmargin}[-2.5cm]{-2cm}
$endif$
\pagestyle{plain}
\begin{center}
\Large
$if(institute)$
\spacedallcaps{\LARGE $institute$} \\
$endif$
$if(department)$
\spacedlowsmallcaps{\LARGE $department$} \\
$endif$
$if(logo)$
\vfill
\includegraphics[width=6cm]{$logo$} \\ \medskip
$endif$
$if(course)$
\spacedlowsmallcaps{$course$} \\
$endif$
\vfill
\begingroup
\color{CTtitle}\spacedallcaps{\huge $title$} \\ \bigskip
\endgroup
$if(subtitle)$
\medskip
\textit{$subtitle$} \\
$endif$
\vfill
$if(author)$
\spacedallcaps{\LARGE $author$} \\
$if(matr)$
\spacedlowsmallcaps{$matr$} \\
$endif$
$endif$
\vfill
$if(supervisor)$
\spacedallcaps{Relatore}\\
\spacedlowsmallcaps{$supervisor.title$}\\
\spacedlowsmallcaps{$supervisor.name$}\\
$endif$
\vfill
$if(academic-year)$
\vfill
\spacedlowsmallcaps{$academic-year$}
$endif$
\end{center}
\end{addmargin}
\end{titlepage}
$endif$
%*******************************************************
% copyright
$if(copyright)$
\clearpage
\thispagestyle{empty}
\hfill
\vfill
\noindent Copyright
\textcopyright\ \the\year{} $if(author)$$author$$endif$
\bigskip
\noindent $copyright$
$endif$
%*******************************************************
% Dedication
$if(dedication)$
\cleardoublepage
\thispagestyle{empty}
\phantomsection
\vspace*{3cm}
\begin{flushright}
\textit{$dedication$}
\end{flushright}
$endif$
%*******************************************************
% Quote
$if(quote)$
\cleardoublepage
\thispagestyle{empty}
\phantomsection
\vspace*{3cm}
\begin{flushright}
\textit{$quote$}\\ \medskip
$if(quote-author)$
--- \spacedlowsmallcaps{$quote-author$}
$endif$
\end{flushright}
$endif$
%*******************************************************
% Abstract
$if(abstract)$
$if(abstract-title)$
\chapter*{$abstract-title$}
$else$
\chapter*{Abstract}
$endif$
%\begin{center}
$abstract$
%\end{center}
$endif$
%*******************************************************
% Index
$if(toc)$
$if(toc-title)$
\renewcommand*\contentsname{$toc-title$}
$endif$
$if(toc-depth)$
\setcounter{tocdepth}{$toc-depth$}
$endif$
\tableofcontents
$endif$
$if(lof)$
$if(lof-title)$
\renewcommand*\listfigurename{$lof-title$}
$endif$
\listoffigures
$endif$
$if(lot)$
$if(lot-title)$
\renewcommand*\listtablename{$lot-title$}
$endif$
\listoftables
$endif$
$if(acronym)$
\phantomsection
$if(ac-title)$
\chapter*{$ac-title$}
$else$
\chapter*{Acronyms}
$endif$
\begin{NoHyper}
\begin{acronym}[TDMA]
$for(acronym)$
\acro{$acronym.short$}{$acronym.long$}
$endfor$
\end{acronym}
\end{NoHyper}
\cleardoublepage
$endif$
%*******************************************************
% Mainmatter
\cleardoublepage
\pagestyle{scrheadings}
\pagenumbering{arabic}
$body$
$if(natbib)$
$if(bibliography)$
$if(biblio-title)$
$if(has-chapters)$
\renewcommand\bibname{$biblio-title$}
$else$
\renewcommand\refname{$biblio-title$}
$endif$
$endif$
\bibliography{$for(bibliography)$$bibliography$$sep$,$endfor$}
$endif$
$endif$
$if(biblatex)$
\printbibliography$if(biblio-title)$[title=$biblio-title$]$endif$
$endif$
$if(acknowledgments)$
$if(acknowledgments-title)$
\chapter*{$acknowledgments-title$}
$else$
\chapter*{acknowledgments}
$endif$
$acknowledgments$
$endif$
\end{document}